Embedded Files
Core Package
Fast execution of variant calling pipeline's best-practices on client's data in the cloud
Add-ons
Assistance in transferring the input data to the cloud
Assistance in preparation of sample sheet
Assistance in downloading the output data into client's system ( personal computer, HPC, Google Drive etc)
Further Analysis
VCF processing
Filtering
Split into SNP and InDel (can be moved into Basic service)
Convert to PLINK format and HapMap format (for filtered files)
Basic statistics report
missing data, allele frequency, heterozygosity - ranges, histograms, scatterplots
PCA (on the given sample set, no outlier removal etc)
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